Publications

Yuanyue Li, Oliver Fiehn (2023). Flash entropy search to query all mass spectral libraries in real time. Nature Methods.

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Elys P. Rodríguez, Yuanyue Li, Arpana Vaniya, Patrick M. Shih, Oliver Fiehn (2023). Alternative Identification of Glycosides Using MS/MS Matching with an In Silico-Modified Aglycone Mass Spectra Library. Analytical Chemistry.

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Yuanyue Li, Tobias Kind, Jacob Folz, Arpana Vaniya, Sajjan Singh Mehta, Oliver Fiehn (2021). Spectral entropy outperforms MS/MS dot product similarity for small-molecule compound identification. Nature Methods.

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Yuanyue Li, Michael Kuhn, Joanna Zukowska-Kasprzyk, Marco L. Hennrich, Panagiotis L. Kastritis, Francis J. O’Reilly, Prasad Phapale, Martin Beck, Anne-Claude Gavin, Peer Bork (2021). Coupling proteomics and metabolomics for the unsupervised identification of protein–metabolite interactions in Chaetomium thermophilum. PLOS ONE.

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Yuanyue Li, Michael Kuhn, Anne-Claude Gavin, Peer Bork (2020). Identification of metabolites from tandem mass spectra with a machine learning approach utilizing structural features. Bioinformatics.

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Panagiotis L Kastritis, Francis J O'Reilly, Thomas Bock, Yuanyue Li, Matt Z Rogon, Katarzyna Buczak, Natalie Romanov, Matthew J Betts, Khanh Huy Bui, Wim J Hagen, Marco L Hennrich, Marie-Therese Mackmull, Juri Rappsilber, Robert B Russell, Peer Bork, Martin Beck, Anne-Claude Gavin (2017). Capturing protein communities by structural proteomics in a thermophilic eukaryote. Molecular Systems Biology.

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Yuanyue Li, Chuan-Qi Zhong, Xiaozheng Xu, Shaowei Cai, Xiurong Wu, Yingying Zhang, Jinan Chen, Jianghong Shi, Shengcai Lin, Jiahuai Han (2015). Group-DIA: analyzing multiple data-independent acquisition mass spectrometry data files. Nature Methods.

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Ting Wu, Yuanyue Li, Deli Huang, Felicia Han, Ying-Ying Zhang, Duan-Wu Zhang, Jiahuai Han (2014). Regulator of G-Protein Signaling 19 (RGS19) and Its Partner Gα-Inhibiting Activity Polypeptide 3 (GNAI3) Are Required for zVAD-Induced Autophagy and Cell Death in L929 Cells. PLOS ONE.

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Xiurong Wu, Wan-Ting He, Shuye Tian, Dan Meng, Yuanyue Li, Wanze Chen, Lisheng Li, Lili Tian, Chuan-Qi Zhong, Felicia Han, Jianming Chen, Jiahuai Han (2014). pelo Is Required for High Efficiency Viral Replication. PLOS Pathogens.

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Chuan-Qi Zhong, Yuanyue Li, Daowei Yang, Na Zhang, Xiaozheng Xu, Yaying Wu, Jinan Chen, Jiahuai Han (2014). Quantitative phosphoproteomic analysis of RIP3-dependent protein phosphorylation in the course of TNF-induced necroptosis. Proteomics.

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Xiurong Wu, Lili Tian, Jie Li, Yingying Zhang, Victor Han, Yuanyue Li, Xiaozheng Xu, Hanjie Li, Xi Chen, Jinan Chen, Wenhai Jin, Yongming Xie, Jiahuai Han, Chuan-Qi Zhong (2012). Investigation of receptor interacting protein (RIP3)-dependent protein phosphorylation by quantitative phosphoproteomics. Molecular & cellular proteomics.

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Hanjie Li, Congting Ye, Guoli Ji, Xiaohui Wu, Zhe Xiang, Yuanyue Li, Yonghao Cao, Xiaolong Liu, Daniel C. Douek, David A. Price, Jiahuai Han (2012). Recombinatorial Biases and Convergent Recombination Determine Interindividual TCRβ Sharing in Murine Thymocytes. The Journal of Immunology.

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Duan-Wu Zhang, Min Zheng, Jing Zhao, Yuanyue Li, Zhe Huang, Zhu Li, Jiahuai Han (2011). Multiple death pathways in TNF-treated fibroblasts: RIP3- and RIP1-dependent and independent routes. Cell Research.

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